Xml For Bioinformatics

Author : Ethan Cerami
Publisher : Springer Science & Business Media
ISBN 13 : 0387274782
Total Pages : 311 pages
Book Rating : 4.82/5 ( download)

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Download or read book XML for Bioinformatics written by Ethan Cerami and published by Springer Science & Business Media. This book was released on 2006-06-02 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction The goal of this book is to introduce XML to a bioinformatics audience. It does so by introducing the fundamentals of XML, Document Type De?nitions (DTDs), XML Namespaces, XML Schema, and XML parsing, and illustrating these concepts with speci?c bioinformatics case studies. The book does not assume any previous knowledge of XML and is geared toward those who want a solid introduction to fundamental XML concepts. The book is divided into nine chapters: Chapter 1: Introduction to XML for Bioinformatics. This chapter provides an introduction to XML and describes the use of XML in biological data exchange. A bird’s-eye view of our ?rst case study, the Distributed Annotation System (DAS), is provided and we examine a sample DAS XML document. The chapter concludes with a discussion of the pros and cons of using XML in bioinformatic applications. Chapter 2: Fundamentals of XML and BSML. This chapter introduces the fundamental concepts of XML and the Bioinformatic Sequence Markup Language (BSML). We explore the origins of XML, de?ne basic rules for XML document structure, and introduce XML Na- spaces. We also explore several sample BSML documents and visualize these documents in the TM Rescentris Genomic Workspace Viewer.

Author : Cerami
Publisher :
ISBN 13 : 9788181283801
Total Pages : 320 pages
Book Rating : 4.05/5 ( download)

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Download or read book Xml For Bioinformatics written by Cerami and published by . This book was released on 2005-01-01 with total page 320 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Author : José Luis Oliveira
Publisher : Springer Science & Business Media
ISBN 13 : 3540296743
Total Pages : 413 pages
Book Rating : 4.44/5 ( download)

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Download or read book Biological and Medical Data Analysis written by José Luis Oliveira and published by Springer Science & Business Media. This book was released on 2005-11-04 with total page 413 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 6th International Symposium on Biological and Medical Data Analysis, ISBMDA 2005, held in Aveiro, Portugal, in November 2005. The 39 revised full papers presented were carefully reviewed and selected for inclusion in the book. The papers are organized in topical sections on medical databases and information systems, data analysis and image processing, knowledge discovery and data mining, statistical methods and tools for biomedical data analysis, decision support systems, collaborative systems in biomedical informatics, as well as computational models, structural analysis, and microarray data analysis in the scope of bioinformatics.

Author : Jeffrey J P Tsai
Publisher : World Scientific
ISBN 13 : 9811203598
Total Pages : 207 pages
Book Rating : 4.96/5 ( download)

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Download or read book Application Of Omics, Ai And Blockchain In Bioinformatics Research written by Jeffrey J P Tsai and published by World Scientific. This book was released on 2019-10-14 with total page 207 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the increasing availability of omics data and mounting evidence of the usefulness of computational approaches to tackle multi-level data problems in bioinformatics and biomedical research in this post-genomics era, computational biology has been playing an increasingly important role in paving the way as basis for patient-centric healthcare.Two such areas are: (i) implementing AI algorithms supported by biomedical data would deliver significant benefits/improvements towards the goals of precision medicine (ii) blockchain technology will enable medical doctors to securely and privately build personal healthcare records, and identify the right therapeutic treatments and predict the progression of the diseases.A follow-up in the publication of our book Computation Methods with Applications in Bioinformatics Analysis (2017), topics in this volume include: clinical bioinformatics, omics-based data analysis, Artificial Intelligence (AI), blockchain, big data analytics, drug discovery, RNA-seq analysis, tensor decomposition and Boolean network.

Author : Darren R. Flower
Publisher : John Wiley & Sons
ISBN 13 : 0470699825
Total Pages : 302 pages
Book Rating : 4.29/5 ( download)

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Download or read book Bioinformatics for Vaccinology written by Darren R. Flower and published by John Wiley & Sons. This book was released on 2008-10-13 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: “... this book was written from start to finish by one extremely dedicated and erudite individual. The author has done an excellent job of covering the many topics that fall under the umbrella of computational biology for vaccine design, demonstrating an admirable command of subject matter in fields as disparate as object-oriented databases and regulation of T cell response. Simply put, it has just the right breadth and depth, and it reads well. In fact, readability is one of its virtues—making the book enticing and useful, all at once...” Human Vaccines, 2010 "... This book has several strong points. Although there are many textbooks that deal with vaccinology, few attempts have been made to bring together descriptions of vaccines in history, basic bioinformatics, various computational solutions and challenges in vaccinology, detailed experimental methodologies, and cutting-edge technologies... This book may well serve as a first line of reference for all biologists and computer scientists..." –Virology Journal, 2009 Vaccines have probably saved more lives and reduced suffering in a greater number of people than any other medical intervention in human history, succeeding in eradicating smallpox and significantly reducing the mortality and incidence of other diseases. However, with the emergence of diseases such as SARS and the threat of biological warfare, vaccination has once again become a topic of major interest in public health. Vaccinology now has at its disposal an array of post-genomic approaches of great power. None has a more persuasive potential impact than the application of computational informatics to vaccine discovery; the recent expansion in genome data and the parallel increase in cheap computing power have placed the bioinformatics exploration of pathogen genomes centre stage for vaccine researchers. This is the first book to address the area of bioinformatics as applied to rational vaccine design, discussing the ways in which bioinformatics can contribute to improved vaccine development by introducing the subject of harnessing the mathematical and computing power inherent in bioinformatics to the study of vaccinology putting it into a historical and societal context, and exploring the scope of its methods and applications. Bioinformatics for Vaccinology is a one-stop introduction to computational vaccinology. It will be of particular interest to bioinformaticians with an interest in immunology, as well as to immunologists, and other biologists who need to understand how advances in theoretical and computational immunobiology can transform their working practices.

Author : Zoé Lacroix
Publisher : Academic Press
ISBN 13 : 155860829X
Total Pages : 466 pages
Book Rating : 4.90/5 ( download)

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Download or read book Bioinformatics written by Zoé Lacroix and published by Academic Press. This book was released on 2003-07-18 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: The heart of the book lies in the collaboration efforts of eight distinct bioinformatics teams that describe their own unique approaches to data integration and interoperability. Each system receives its own chapter where the lead contributors provide precious insight into the specific problems being addressed by the system, why the particular architecture was chosen, and details on the system's strengths and weaknesses. In closing, the editors provide important criteria for evaluating these systems that bioinformatics professionals will find valuable. * Provides a clear overview of the state-of-the-art in data integration and interoperability in genomics, highlighting a variety of systems and giving insight into the strengths and weaknesses of their different approaches.-

Author : S. Balamurugan
Publisher : John Wiley & Sons
ISBN 13 : 1119654718
Total Pages : 354 pages
Book Rating : 4.11/5 ( download)

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Download or read book Computation in BioInformatics written by S. Balamurugan and published by John Wiley & Sons. This book was released on 2021-10-19 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: COMPUTATION IN BIOINFORMATICS Bioinformatics is a platform between the biology and information technology and this book provides readers with an understanding of the use of bioinformatics tools in new drug design. The discovery of new solutions to pandemics is facilitated through the use of promising bioinformatics techniques and integrated approaches. This book covers a broad spectrum of the bioinformatics field, starting with the basic principles, concepts, and application areas. Also covered is the role of bioinformatics in drug design and discovery, including aspects of molecular modeling. Some of the chapters provide detailed information on bioinformatics related topics, such as silicon design, protein modeling, DNA microarray analysis, DNA-RNA barcoding, and gene sequencing, all of which are currently needed in the industry. Also included are specialized topics, such as bioinformatics in cancer detection, genomics, and proteomics. Moreover, a few chapters explain highly advanced topics, like machine learning and covalent approaches to drug design and discovery, all of which are significant in pharma and biotech research and development. Audience Researchers and engineers in computation biology, information technology, bioinformatics, drug design, biotechnology, pharmaceutical sciences.

Author : Teresa K. Attwood
Publisher : John Wiley & Sons
ISBN 13 : 047003548X
Total Pages : 424 pages
Book Rating : 4.81/5 ( download)

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Download or read book Bioinformatics Challenges at the Interface of Biology and Computer Science written by Teresa K. Attwood and published by John Wiley & Sons. This book was released on 2016-09-26 with total page 424 pages. Available in PDF, EPUB and Kindle. Book excerpt: This innovative book provides a completely fresh exploration of bioinformatics, investigating its complex interrelationship with biology and computer science. It approaches bioinformatics from a unique perspective, highlighting interdisciplinary gaps that often trap the unwary. The book considers how the need for biological databases drove the evolution of bioinformatics; it reviews bioinformatics basics (including database formats, data-types and current analysis methods), and examines key topics in computer science (including data-structures, identifiers and algorithms), reflecting on their use and abuse in bioinformatics. Bringing these disciplines together, this book is an essential read for those who wish to better understand the challenges for bioinformatics at the interface of biology and computer science, and how to bridge the gaps. It will be an invaluable resource for advanced undergraduate and postgraduate students, and for lecturers, researchers and professionals with an interest in this fascinating, fast-moving discipline and the knotty problems that surround it.

Author : Li, Changqing
Publisher : IGI Global
ISBN 13 : 1615207287
Total Pages : 500 pages
Book Rating : 4.82/5 ( download)

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Download or read book Advanced Applications and Structures in XML Processing: Label Streams, Semantics Utilization and Data Query Technologies written by Li, Changqing and published by IGI Global. This book was released on 2010-02-28 with total page 500 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book is for professionals and researchers working in the field of XML in various disciplines who want to improve their understanding of the XML data management technologies, such as XML models, XML query and update processing, XML query languages and their implementations, keywords search in XML documents, database, web service, publish/subscribe, medical information science, and e-business"--Provided by publisher.

Author : Mitchell L Model
Publisher : "O'Reilly Media, Inc."
ISBN 13 : 1449382908
Total Pages : 526 pages
Book Rating : 4.02/5 ( download)

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Download or read book Bioinformatics Programming Using Python written by Mitchell L Model and published by "O'Reilly Media, Inc.". This book was released on 2009-12-08 with total page 526 pages. Available in PDF, EPUB and Kindle. Book excerpt: Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter