Quantitative Biosciences Companion In Python

Author : Joshua S. Weitz
Publisher : Princeton University Press
ISBN 13 : 0691255679
Total Pages : 272 pages
Book Rating : 4.75/5 ( download)

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Download or read book Quantitative Biosciences Companion in Python written by Joshua S. Weitz and published by Princeton University Press. This book was released on 2024-03-05 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: A hands-on lab guide in the Python programming language that enables students in the life sciences to reason quantitatively about living systems across scales This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students—whether from the life sciences, physics, computational sciences, engineering, or mathematics—how to reason quantitatively in the face of uncertainty. Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities Encourages good coding practices, clear and understandable modeling, and accessible presentation of results Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own Stand-alone computational lab guides for Quantitative Biosciences also available in R and MATLAB

Author : Joshua S. Weitz
Publisher : Princeton University Press
ISBN 13 : 0691259615
Total Pages : 273 pages
Book Rating : 4.11/5 ( download)

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Download or read book Quantitative Biosciences Companion in Python written by Joshua S. Weitz and published by Princeton University Press. This book was released on 2024-01-09 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt: A hands-on lab guide in the Python programming language that enables students in the life sciences to reason quantitatively about living systems across scales This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students—whether from the life sciences, physics, computational sciences, engineering, or mathematics—how to reason quantitatively in the face of uncertainty. Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities Encourages good coding practices, clear and understandable modeling, and accessible presentation of results Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own Stand-alone computational lab guides for Quantitative Biosciences also available in R and MATLAB

Author : Joshua S. Weitz
Publisher : Princeton University Press
ISBN 13 : 0691259607
Total Pages : 273 pages
Book Rating : 4.04/5 ( download)

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Download or read book Quantitative Biosciences Companion in R written by Joshua S. Weitz and published by Princeton University Press. This book was released on 2024-01-09 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt: A hands-on lab guide in the R programming language that enables students in the life sciences to reason quantitatively about living systems across scales This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students—whether from the life sciences, physics, computational sciences, engineering, or mathematics—how to reason quantitatively in the face of uncertainty. Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities Encourages good coding practices, clear and understandable modeling, and accessible presentation of results Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own Stand-alone computational lab guides for Quantitative Biosciences also available in Python and MATLAB

Author : Joshua S. Weitz
Publisher : Princeton University Press
ISBN 13 : 0691255687
Total Pages : 256 pages
Book Rating : 4.82/5 ( download)

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Download or read book Quantitative Biosciences Companion in MATLAB written by Joshua S. Weitz and published by Princeton University Press. This book was released on 2024-03-05 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: A hands-on lab guide in the MATLAB programming language that enables students in the life sciences to reason quantitatively about living systems across scales This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students—whether from the life sciences, physics, computational sciences, engineering, or mathematics—how to reason quantitatively in the face of uncertainty. Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities Encourages good coding practices, clear and understandable modeling, and accessible presentation of results Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own Stand-alone computational lab guides for Quantitative Biosciences also available in Python and R

Author : Joshua S. Weitz
Publisher : Princeton University Press
ISBN 13 : 0691255660
Total Pages : 272 pages
Book Rating : 4.68/5 ( download)

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Download or read book Quantitative Biosciences Companion in R written by Joshua S. Weitz and published by Princeton University Press. This book was released on 2024-03-05 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: A hands-on lab guide in the R programming language that enables students in the life sciences to reason quantitatively about living systems across scales This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students—whether from the life sciences, physics, computational sciences, engineering, or mathematics—how to reason quantitatively in the face of uncertainty. Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities Encourages good coding practices, clear and understandable modeling, and accessible presentation of results Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own Stand-alone computational lab guides for Quantitative Biosciences also available in Python and MATLAB

Author : Allegra Via
Publisher : Chapman & Hall/CRC
ISBN 13 : 9781138407220
Total Pages : pages
Book Rating : 4.24/5 ( download)

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Download or read book Managing Your Biological Data with Python written by Allegra Via and published by Chapman & Hall/CRC. This book was released on 2017-08-21 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Take Control of Your Data and Use Python with Confidence Requiring no prior programming experience, Managing Your Biological Data with Python empowers biologists and other life scientists to work with biological data on their own using the Python language. The book teaches them not only how to program but also how to manage their data. It shows how to read data from files in different formats, analyze and manipulate the data, and write the results to a file or computer screen. The first part of the text introduces the Python language and teaches readers how to write their first programs. The second part presents the basic elements of the language, enabling readers to write small programs independently. The third part explains how to create bigger programs using techniques to write well-organized, efficient, and error-free code. The fourth part on data visualization shows how to plot data and draw a figure for an article or slide presentation. The fifth part covers the Biopython programming library for reading and writing several biological file formats, querying the NCBI online databases, and retrieving biological records from the web. The last part provides a cookbook of 20 specific programming "recipes," ranging from secondary structure prediction and multiple sequence alignment analyses to superimposing protein three-dimensional structures. Tailoring the programming topics to the everyday needs of biologists, the book helps them easily analyze data and ultimately make better discoveries. Every piece of code in the text is aimed at solving real biological problems.

Author : Joshua S. Weitz
Publisher : Princeton University Press
ISBN 13 : 0691181500
Total Pages : 0 pages
Book Rating : 4.09/5 ( download)

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Download or read book Quantitative Biosciences written by Joshua S. Weitz and published by Princeton University Press. This book was released on 2024-03-05 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: A hands-on approach to quantitative reasoning in the life sciences Quantitative Biosciences establishes the quantitative principles of how living systems work across scales, drawing on classic and modern discoveries to present a case study approach that links mechanisms, models, and measurements. Each case study is organized around a central question in the life sciences: Are mutations dependent on selection? How do cells respond to fluctuating signals in the environment? How do organisms move in flocks given local sensing? How does the size of an epidemic depend on its initial speed of spread? Each question provides the basis for introducing landmark advances in the life sciences while teaching students--whether from the life sciences, physics, computational sciences, engineering, or mathematics--how to reason quantitatively about living systems given uncertainty. Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities Stand-alone lab guides available in Python, R, and MATLAB help students move from learning in the classroom to doing research in practice Homework exercises build on the lab guides, emphasizing computational model development and analysis rather than pencil-and-paper derivations Suitable for capstone undergraduate classes, foundational graduate classes, or as part of interdisciplinary courses for students from quantitative backgrounds Can be used as part of conventional, flipped, or hybrid instruction formats Additional materials available to instructors, including lesson plans and homework solutions

Author : Raghuveer Parthasarathy
Publisher : Princeton University Press
ISBN 13 : 0691200408
Total Pages : 336 pages
Book Rating : 4.08/5 ( download)

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Download or read book So Simple a Beginning written by Raghuveer Parthasarathy and published by Princeton University Press. This book was released on 2022-02-08 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: A biophysicist reveals the hidden unity behind nature’s breathtaking complexity The form and function of a sprinting cheetah are quite unlike those of a rooted tree. A human being is very different from a bacterium or a zebra. The living world is a realm of dazzling variety, yet a shared set of physical principles shapes the forms and behaviors of every creature in it. So Simple a Beginning shows how the emerging new science of biophysics is transforming our understanding of life on Earth and enabling potentially lifesaving but controversial technologies such as gene editing, artificial organ growth, and ecosystem engineering. Raghuveer Parthasarathy explains how four basic principles—self-assembly, regulatory circuits, predictable randomness, and scaling—shape the machinery of life on scales ranging from microscopic molecules to gigantic elephants. He describes how biophysics is helping to unlock the secrets of a host of natural phenomena, such as how your limbs know to form at the proper places, and why humans need lungs but ants do not. Parthasarathy explores how the cutting-edge biotechnologies of tomorrow could enable us to alter living things in ways both subtle and profound. Featuring dozens of original watercolors and drawings by the author, this sweeping tour of biophysics offers astonishing new perspectives on how the wonders of life can arise from so simple a beginning.

Author : Sonia Contera
Publisher : Princeton University Press
ISBN 13 : 0691168806
Total Pages : 232 pages
Book Rating : 4.07/5 ( download)

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Download or read book Nano Comes to Life written by Sonia Contera and published by Princeton University Press. This book was released on 2019-11-05 with total page 232 pages. Available in PDF, EPUB and Kindle. Book excerpt: Embracing Biology's Complexity, At Last -- Learning by Making: DNA and Protein Nanotechnology -- Nano in Medicine -- Recreating Tissues and Organs -- Conclusions : Life Changes Everything.

Author : William Bialek
Publisher : Princeton University Press
ISBN 13 : 1400845572
Total Pages : 640 pages
Book Rating : 4.76/5 ( download)

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Download or read book Biophysics written by William Bialek and published by Princeton University Press. This book was released on 2012-12-17 with total page 640 pages. Available in PDF, EPUB and Kindle. Book excerpt: Interactions between the fields of physics and biology reach back over a century, and some of the most significant developments in biology--from the discovery of DNA's structure to imaging of the human brain--have involved collaboration across this disciplinary boundary. For a new generation of physicists, the phenomena of life pose exciting challenges to physics itself, and biophysics has emerged as an important subfield of this discipline. Here, William Bialek provides the first graduate-level introduction to biophysics aimed at physics students. Bialek begins by exploring how photon counting in vision offers important lessons about the opportunities for quantitative, physics-style experiments on diverse biological phenomena. He draws from these lessons three general physical principles--the importance of noise, the need to understand the extraordinary performance of living systems without appealing to finely tuned parameters, and the critical role of the representation and flow of information in the business of life. Bialek then applies these principles to a broad range of phenomena, including the control of gene expression, perception and memory, protein folding, the mechanics of the inner ear, the dynamics of biochemical reactions, and pattern formation in developing embryos. Featuring numerous problems and exercises throughout, Biophysics emphasizes the unifying power of abstract physical principles to motivate new and novel experiments on biological systems. Covers a range of biological phenomena from the physicist's perspective Features 200 problems Draws on statistical mechanics, quantum mechanics, and related mathematical concepts Includes an annotated bibliography and detailed appendixes Instructor's manual (available only to teachers)