Protein Structure Prediction And Gene Bi Clustering By Soft Computing Approach

Author : Dr Veera Talukdar
Publisher : Archers & Elevators Publishing House
ISBN 13 : 9386501783
Total Pages : pages
Book Rating : 4.83/5 ( download)

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Download or read book Protein Structure Prediction and Gene Bi-clustering by Soft Computing Approach written by Dr Veera Talukdar and published by Archers & Elevators Publishing House. This book was released on with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Author : Sanghamitra Bandyopadhyay
Publisher : World Scientific
ISBN 13 : 9812708898
Total Pages : 353 pages
Book Rating : 4.92/5 ( download)

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Download or read book Analysis of Biological Data written by Sanghamitra Bandyopadhyay and published by World Scientific. This book was released on 2007 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics, a field devoted to the interpretation and analysis of biological data using computational techniques, has evolved tremendously in recent years due to the explosive growth of biological information generated by the scientific community. Soft computing is a consortium of methodologies that work synergistically and provides, in one form or another, flexible information processing capabilities for handling real-life ambiguous situations. Several research articles dealing with the application of soft computing tools to bioinformatics have been published in the recent past; however, they are scattered in different journals, conference proceedings and technical reports, thus causing inconvenience to readers, students and researchers. This book, unique in its nature, is aimed at providing a treatise in a unified framework, with both theoretical and experimental results, describing the basic principles of soft computing and demonstrating the various ways in which they can be used for analyzing biological data in an efficient manner. Interesting research articles from eminent scientists around the world are brought together in a systematic way such that the reader will be able to understand the issues and challenges in this domain, the existing ways of tackling them, recent trends, and future directions. This book is the first of its kind to bring together two important research areas, soft computing and bioinformatics, in order to demonstrate how the tools and techniques in the former can be used for efficiently solving several problems in the latter. Sample Chapter(s). Chapter 1: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments (160 KB). Contents: Overview: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments (H Tang & S Kim); An Introduction to Soft Computing (A Konar & S Das); Biological Sequence and Structure Analysis: Reconstructing Phylogenies with Memetic Algorithms and Branch-and-Bound (J E Gallardo et al.); Classification of RNA Sequences with Support Vector Machines (J T L Wang & X Wu); Beyond String Algorithms: Protein Sequence Analysis Using Wavelet Transforms (A Krishnan & K-B Li); Filtering Protein Surface Motifs Using Negative Instances of Active Sites Candidates (N L Shrestha & T Ohkawa); Distill: A Machine Learning Approach to Ab Initio Protein Structure Prediction (G Pollastri et al.); In Silico Design of Ligands Using Properties of Target Active Sites (S Bandyopadhyay et al.); Gene Expression and Microarray Data Analysis: Inferring Regulations in a Genomic Network from Gene Expression Profiles (N Noman & H Iba); A Reliable Classification of Gene Clusters for Cancer Samples Using a Hybrid Multi-Objective Evolutionary Procedure (K Deb et al.); Feature Selection for Cancer Classification Using Ant Colony Optimization and Support Vector Machines (A Gupta et al.); Sophisticated Methods for Cancer Classification Using Microarray Data (S-B Cho & H-S Park); Multiobjective Evolutionary Approach to Fuzzy Clustering of Microarray Data (A Mukhopadhyay et al.). Readership: Graduate students and researchers in computer science, bioinformatics, computational and molecular biology, artificial intelligence, data mining, machine learning, electrical engineering, system science; researchers in pharmaceutical industries.

Author : Hemant J. Purohit
Publisher : Springer
ISBN 13 : 9811074550
Total Pages : 300 pages
Book Rating : 4.54/5 ( download)

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Download or read book Soft Computing for Biological Systems written by Hemant J. Purohit and published by Springer. This book was released on 2018-02-19 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book explains how the biological systems and their functions are driven by genetic information stored in the DNA, and their expression driven by different factors. The soft computing approach recognizes the different patterns in DNA sequence and try to assign the biological relevance with available information.The book also focuses on using the soft-computing approach to predict protein-protein interactions, gene expression and networks. The insights from these studies can be used in metagenomic data analysis and predicting artificial neural networks.

Author : Ujjwal Maulik
Publisher : Springer Science & Business Media
ISBN 13 : 3642166156
Total Pages : 292 pages
Book Rating : 4.50/5 ( download)

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Download or read book Multiobjective Genetic Algorithms for Clustering written by Ujjwal Maulik and published by Springer Science & Business Media. This book was released on 2011-09-01 with total page 292 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first book primarily dedicated to clustering using multiobjective genetic algorithms with extensive real-life applications in data mining and bioinformatics. The authors first offer detailed introductions to the relevant techniques – genetic algorithms, multiobjective optimization, soft computing, data mining and bioinformatics. They then demonstrate systematic applications of these techniques to real-world problems in the areas of data mining, bioinformatics and geoscience. The authors offer detailed theoretical and statistical notes, guides to future research, and chapter summaries. The book can be used as a textbook and as a reference book by graduate students and academic and industrial researchers in the areas of soft computing, data mining, bioinformatics and geoscience.

Author : Huzefa Rangwala
Publisher : John Wiley & Sons
ISBN 13 : 111809946X
Total Pages : 611 pages
Book Rating : 4.69/5 ( download)

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Download or read book Introduction to Protein Structure Prediction written by Huzefa Rangwala and published by John Wiley & Sons. This book was released on 2011-03-16 with total page 611 pages. Available in PDF, EPUB and Kindle. Book excerpt: A look at the methods and algorithms used to predict protein structure A thorough knowledge of the function and structure of proteins is critical for the advancement of biology and the life sciences as well as the development of better drugs, higher-yield crops, and even synthetic bio-fuels. To that end, this reference sheds light on the methods used for protein structure prediction and reveals the key applications of modeled structures. This indispensable book covers the applications of modeled protein structures and unravels the relationship between pure sequence information and three-dimensional structure, which continues to be one of the greatest challenges in molecular biology. With this resource, readers will find an all-encompassing examination of the problems, methods, tools, servers, databases, and applications of protein structure prediction and they will acquire unique insight into the future applications of the modeled protein structures. The book begins with a thorough introduction to the protein structure prediction problem and is divided into four themes: a background on structure prediction, the prediction of structural elements, tertiary structure prediction, and functional insights. Within those four sections, the following topics are covered: Databases and resources that are commonly used for protein structure prediction The structure prediction flagship assessment (CASP) and the protein structure initiative (PSI) Definitions of recurring substructures and the computational approaches used for solving sequence problems Difficulties with contact map prediction and how sophisticated machine learning methods can solve those problems Structure prediction methods that rely on homology modeling, threading, and fragment assembly Hybrid methods that achieve high-resolution protein structures Parts of the protein structure that may be conserved and used to interact with other biomolecules How the loop prediction problem can be used for refinement of the modeled structures The computational model that detects the differences between protein structure and its modeled mutant Whether working in the field of bioinformatics or molecular biology research or taking courses in protein modeling, readers will find the content in this book invaluable.

Author : Dash, Sujata
Publisher : IGI Global
ISBN 13 : 1522504281
Total Pages : 514 pages
Book Rating : 4.83/5 ( download)

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Download or read book Handbook of Research on Computational Intelligence Applications in Bioinformatics written by Dash, Sujata and published by IGI Global. This book was released on 2016-06-20 with total page 514 pages. Available in PDF, EPUB and Kindle. Book excerpt: Developments in the areas of biology and bioinformatics are continuously evolving and creating a plethora of data that needs to be analyzed and decrypted. Since it can be difficult to decipher the multitudes of data within these areas, new computational techniques and tools are being employed to assist researchers in their findings. The Handbook of Research on Computational Intelligence Applications in Bioinformatics examines emergent research in handling real-world problems through the application of various computation technologies and techniques. Featuring theoretical concepts and best practices in the areas of computational intelligence, artificial intelligence, big data, and bio-inspired computing, this publication is a critical reference source for graduate students, professionals, academics, and researchers.

Author : Srikanta Patnaik
Publisher : Springer Science & Business Media
ISBN 13 : 364225506X
Total Pages : 222 pages
Book Rating : 4.69/5 ( download)

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Download or read book Soft Computing Techniques in Vision Science written by Srikanta Patnaik and published by Springer Science & Business Media. This book was released on 2012-02-15 with total page 222 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Special Edited Volume is a unique approach towards Computational solution for the upcoming field of study called Vision Science. From a scientific firmament Optics, Ophthalmology, and Optical Science has surpassed an Odyssey of optimizing configurations of Optical systems, Surveillance Cameras and other Nano optical devices with the metaphor of Nano Science and Technology. Still these systems are falling short of its computational aspect to achieve the pinnacle of human vision system. In this edited volume much attention has been given to address the coupling issues Computational Science and Vision Studies. It is a comprehensive collection of research works addressing various related areas of Vision Science like Visual Perception and Visual system, Cognitive Psychology, Neuroscience, Psychophysics and Ophthalmology, linguistic relativity, color vision etc. This issue carries some latest developments in the form of research articles and presentations. The volume is rich of contents with technical tools for convenient experimentation in Vision Science. There are 18 research papers having significance in an array of application areas. The volume claims to be an effective compendium of computing developments like Frequent Pattern Mining, Genetic Algorithm, Gabor Filter, Support Vector Machine, Region Based Mask Filter, 4D stereo camera systems, Principal Component Analysis etc. The detailed analysis of the papers can immensely benefit to the researchers of this domain. It can be an Endeavour in the pursuit of adding value in the existing stock of knowledge in Vision Science.

Author : Christine Orengo
Publisher : Taylor & Francis
ISBN 13 : 1135325235
Total Pages : 406 pages
Book Rating : 4.37/5 ( download)

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Download or read book Bioinformatics written by Christine Orengo and published by Taylor & Francis. This book was released on 2003-12-16 with total page 406 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics, the use of computers to address biological questions, has become an essential tool in biological research. It is one of the critical keys needed to unlock the information encoded in the flood of data generated by genome, protein structure, transcriptome and proteome research. Bioinformatics: Genes, Proteins & Computers covers both the more traditional approaches to bioinformatics, including gene and protein sequence analysis and structure prediction, and more recent technologies such as datamining of transcriptomic and proteomic data to provide insights on cellular mechanisms and the causes of disease.

Author : Igor F. Tsigelny
Publisher : Internat'l University Line
ISBN 13 : 9780963681775
Total Pages : 540 pages
Book Rating : 4.7X/5 ( download)

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Download or read book Protein Structure Prediction written by Igor F. Tsigelny and published by Internat'l University Line. This book was released on 2002 with total page 540 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Author : Ingvar Eidhammer
Publisher : John Wiley & Sons
ISBN 13 :
Total Pages : 384 pages
Book Rating : 4.42/5 ( download)

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Download or read book Protein Bioinformatics written by Ingvar Eidhammer and published by John Wiley & Sons. This book was released on 2004-02-13 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt: Pairwise global alignment of sequences. Pairwise local alignment and database search. Statical analysis. Multiple global alignment and phylogenetic trees. Scoring matrices. Profiles. Sequence patterns. Structures and structure descriptions. Superposition and Dynamic programming. Geometric techniques. Clustering: Combining local similarities. Significance and assessment of structure comparisons. Multiple structure comparison. Protein structure classification. Structure prediction: Threading. Basics in mathematics, probability and algorithms. Introduction to molecular biology.