Computational Modeling Of Signaling Networks

Author : Lan K. Nguyen
Publisher : Springer Nature
ISBN 13 : 1071630083
Total Pages : 387 pages
Book Rating : 4.82/5 ( download)

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Download or read book Computational Modeling of Signaling Networks written by Lan K. Nguyen and published by Springer Nature. This book was released on 2023-04-19 with total page 387 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume focuses on the computational modeling of cell signaling networks and the application of these models and model-based analysis to systems and personalized medicine. Chapters guide readers through various modeling approaches for signaling networks, new methods and techniques that facilitate model development and analysis, and new applications of signaling network modeling towards systems and personalized treatment of cancer. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and methods, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Computational Modeling of Signaling Networks aims to benefit a wide spectrum of readers including researchers from the biological as well as computational systems biology communities.

Author : Sangdun Choi
Publisher : Springer Science & Business Media
ISBN 13 : 1441957979
Total Pages : 900 pages
Book Rating : 4.79/5 ( download)

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Download or read book Systems Biology for Signaling Networks written by Sangdun Choi and published by Springer Science & Business Media. This book was released on 2010-08-09 with total page 900 pages. Available in PDF, EPUB and Kindle. Book excerpt: System Biology encompasses the knowledge from diverse fields such as Molecular Biology, Immunology, Genetics, Computational Biology, Mathematical Biology, etc. not only to address key questions that are not answerable by individual fields alone, but also to help in our understanding of the complexities of biological systems. Whole genome expression studies have provided us the means of studying the expression of thousands of genes under a particular condition and this technique had been widely used to find out the role of key macromolecules that are involved in biological signaling pathways. However, making sense of the underlying complexity is only possible if we interconnect various signaling pathways into human and computer readable network maps. These maps can then be used to classify and study individual components involved in a particular phenomenon. Apart from transcriptomics, several individual gene studies have resulted in adding to our knowledge of key components that are involved in a signaling pathway. It therefore becomes imperative to take into account of these studies also, while constructing our network maps to highlight the interconnectedness of the entire signaling pathways and the role of that particular individual protein in the pathway. This collection of articles will contain a collection of pioneering work done by scientists working in regulatory signaling networks and the use of large scale gene expression and omics data. The distinctive features of this book would be: Act a single source of information to understand the various components of different signaling network (roadmap of biochemical pathways, the nature of a molecule of interest in a particular pathway, etc.), Serve as a platform to highlight the key findings in this highly volatile and evolving field, and Provide answers to various techniques both related to microarray and cell signaling to the readers.

Author : Zhong Shao
Publisher : Springer
ISBN 13 : 9783540766360
Total Pages : 436 pages
Book Rating : 4.67/5 ( download)

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Download or read book Programming Languages and Systems written by Zhong Shao and published by Springer. This book was released on 2007-11-07 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 5th Asian Symposium on Programming Languages and Systems, APLAS 2007, held in Singapore, in November/December 2007. The 25 revised full papers presented together with three invited talks were carefully reviewed and selected from 84 submissions. The symposium addresses all issues in programming languages and systems - ranging from foundational to practical issues. The papers focus on a broad range of topics.

Author : Hamid Bolouri
Publisher : Imperial College Press
ISBN 13 : 1848162200
Total Pages : 341 pages
Book Rating : 4.04/5 ( download)

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Download or read book Computational Modeling of Gene Regulatory Networks written by Hamid Bolouri and published by Imperial College Press. This book was released on 2008 with total page 341 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book serves as an introduction to the myriad computational approaches to gene regulatory modeling and analysis, and is written specifically with experimental biologists in mind. Mathematical jargon is avoided and explanations are given in intuitive terms. In cases where equations are unavoidable, they are derived from first principles or, at the very least, an intuitive description is provided. Extensive examples and a large number of model descriptions are provided for use in both classroom exercises as well as self-guided exploration and learning. As such, the book is ideal for self-learning and also as the basis of a semester-long course for undergraduate and graduate students in molecular biology, bioengineering, genome sciences, or systems biology.

Author : James M. Bower
Publisher : MIT Press
ISBN 13 : 9780262524230
Total Pages : 386 pages
Book Rating : 4.36/5 ( download)

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Download or read book Computational Modeling of Genetic and Biochemical Networks written by James M. Bower and published by MIT Press. This book was released on 2001 with total page 386 pages. Available in PDF, EPUB and Kindle. Book excerpt: How new modeling techniques can be used to explore functionally relevant molecular and cellular relationships.

Author : David Sterratt
Publisher : Cambridge University Press
ISBN 13 : 1108483143
Total Pages : 553 pages
Book Rating : 4.48/5 ( download)

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Download or read book Principles of Computational Modelling in Neuroscience written by David Sterratt and published by Cambridge University Press. This book was released on 2023-10-05 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn to use computational modelling techniques to understand the nervous system at all levels, from ion channels to networks.

Author : Christina Kiel
Publisher : Elsevier Inc. Chapters
ISBN 13 : 0128070064
Total Pages : 548 pages
Book Rating : 4.62/5 ( download)

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Download or read book Computational Systems Biology written by Christina Kiel and published by Elsevier Inc. Chapters. This book was released on 2013-11-26 with total page 548 pages. Available in PDF, EPUB and Kindle. Book excerpt: This chapter brings mammalian signal transduction to the center of quantitative and integrative sciences. Historically imbedded within human physiology, thanks to proteomics, interactomics, and molecular biology approaches, signaling is now far beyond the “black box” principle. However, despite the large amount of data available, we still have only limited insight into general design principles, and we lack knowledge on how cell type-specific signaling is achieved. Here, we summarize recent efforts in elucidating cell type-specific signaling, and in particular the role of protein abundances, signaling complexes and modules. We further discuss the potential of using synthetic biology approaches to decipher signaling networks. All of this is discussed in light of complementary quantitative mathematical modeling approaches. Signaling, more than any other discipline, needs computational biology to capture the dynamic systems behavior, and to reach its final goal: to be truly predictive for both the physiological and disease perturbed cellular conditions.

Author : Hannu Eskola
Publisher : Springer
ISBN 13 : 9811051224
Total Pages : 1139 pages
Book Rating : 4.27/5 ( download)

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Download or read book EMBEC & NBC 2017 written by Hannu Eskola and published by Springer. This book was released on 2017-06-12 with total page 1139 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume presents the proceedings of the joint conference of the European Medical and Biological Engineering Conference (EMBEC) and the Nordic-Baltic Conference on Biomedical Engineering and Medical Physics (NBC), held in Tampere, Finland, in June 2017. The proceedings present all traditional biomedical engineering areas, but also highlight new emerging fields, such as tissue engineering, bioinformatics, biosensing, neurotechnology, additive manufacturing technologies for medicine and biology, and bioimaging, to name a few. Moreover, it emphasizes the role of education, translational research, and commercialization.

Author : James Ferrell
Publisher : Garland Science
ISBN 13 : 1000430731
Total Pages : 285 pages
Book Rating : 4.38/5 ( download)

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Download or read book Systems Biology of Cell Signaling written by James Ferrell and published by Garland Science. This book was released on 2021-09-28 with total page 285 pages. Available in PDF, EPUB and Kindle. Book excerpt: How can we understand the complexity of genes, RNAs, and proteins and the associated regulatory networks? One approach is to look for recurring types of dynamical behavior. Mathematical models prove to be useful, especially models coming from theories of biochemical reactions such as ordinary differential equation models. Clever, careful experiments test these models and their basis in specific theories. This textbook aims to provide advanced students with the tools and insights needed to carry out studies of signal transduction drawing on modeling, theory, and experimentation. Early chapters summarize the basic building blocks of signaling systems: binding/dissociation, synthesis/destruction, and activation/inactivation. Subsequent chapters introduce various basic circuit devices: amplifiers, stabilizers, pulse generators, switches, stochastic spike generators, and oscillators. All chapters consistently use approaches and concepts from chemical kinetics and nonlinear dynamics, including rate-balance analysis, phase plane analysis, nullclines, linear stability analysis, stable nodes, saddles, unstable nodes, stable and unstable spirals, and bifurcations. This textbook seeks to provide quantitatively inclined biologists and biologically inclined physicists with the tools and insights needed to apply modeling and theory to interesting biological processes. Key Features: Full-color illustration program with diagrams to help illuminate the concepts Enables the reader to apply modeling and theory to the biological processes Further Reading for each chapter High-quality figures available for instructors to download

Author : Lewis C. Cantley
Publisher :
ISBN 13 : 9780879699017
Total Pages : 452 pages
Book Rating : 4.19/5 ( download)

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Download or read book Signal Transduction written by Lewis C. Cantley and published by . This book was released on 2014-05-31 with total page 452 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This textbook provides a comprehensive view of signal transduction, covering both the fundamental mechanisms involved and their roles in key biological processes. It first lays out the basic principles of signal transduction, explaining how different receptors receive information and transmit it via signaling proteins, ions, and second messengers. It then surveys the major signaling pathways that operate in cells, before examining in detail how these function in processes such as cell growth and division, cell movement, metabolism, development, reproduction, the nervous system, and immune function"--